DougSpeed.com
The Home of LDAK
Skip to content
Downloads
Test Datasets
Resources
Advice
Recommendations
Main Arguments
Parallel Computing
Publications
Protocols
Short Courses
Heritability Model
Technical Details
BLD-LDAK Annotations
LDAK Weightings
Comparing Models
Association Testing
Single-Predictor Analysis
Gene-based Analysis
LDAK-GBAT
Clumping
REML / HE / PCGC
Calculate Kinships
REML
BLUP
HE Regression
PCGC Regression
Genomic Partitioning
Small Datasets
SumHer
Pre-computed Taggings
Calculate Taggings
SNP Heritability
Heritability Enrichments
Genetic Correlations
Estimate Alpha
Confounding Bias
SNP Subsets
Prediction
Quick PRS
Per-Predictor Heritabilities
Ridge Predict
Bolt Predict
BayesR Predict
MegaPRS
Using a Validation Dataset
Worked Examples
MultiBLUP
More Features
Adjust Kinships
Calculate Scores
Calculate Statistics
Filter Relatedness
Make Data
Manipulate Kinships
Principal Components
Pseudo Summaries
Simulate Data
Thin Predictors
Other Details
1000 Genomes Project
Advanced Options
Data Filtering
File Formats
High-LD Regions
Kinship Formats
Phenotypes and Covariates
Quality Control
Reference Panel
Sample Subsets
Summary Statistics
Help
Class
Here are two Manhattan plots. Which is for lupus, which is for height?
LDAK: it’s just better
